Connectivity Profile Analysis (CPA)

Between-Group CPA (Matlab)

Subject-Level CPA (Matlab)

CPA Statistical Thresholding (Matlab)

Temporal Unwrapping/ Communication Synchrony

Temporal Communication Patterns Across Edges in a Circuit/Network (Matlab)

Machine Learning

Use Nested Cross-Validation to Predict Group Classification from Voxel-Wise Data (Matlab)

Predict Task Performance/Demographic Variables in an Out-of-Sample Group from Voxel-Wise Data (Matlab)

Detecting and Removing Functional Connectivity Inflation

Detect and remove the FC inflation artifact from your data (Shell + Matlab)

Functional Connectivity

Clean Minimally-Processed HCP Resting-State Scans & Create Seed-Based Connectivity Maps (Bash)

Create Motion Censor Files from fMRIPrep Output (Python)

Permutation Testing/Miscellaneous

Calculate the Manhattan Distance between a Voxel’s Ipsilateral and Contralateral Connectivity Profiles (Bash)

Quantify the Overlap of Two Voxel Clusters and Compute Significance (R)